# HG changeset patch
# User dfornika
# Date 1556923935 14400
# Node ID df30afab73fabae61f88c81e634eb5d329af9948
# Parent  2180fe4e7dba16793b439f0c4f27ea10a412f850
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 558493454e620f1d7c628fd604de1f46c1b50ebc-dirty

diff -r 2180fe4e7dba -r df30afab73fa data_manager/kraken2_build_database.xml
--- a/data_manager/kraken2_build_database.xml	Fri May 03 18:48:04 2019 -0400
+++ b/data_manager/kraken2_build_database.xml	Fri May 03 18:52:15 2019 -0400
@@ -24,6 +24,12 @@
             --kmer-len ${database_type.kmer_len}
             --minimizer-len ${database_type.minimizer_len}
             --minimizer-spaces ${database_type.minimizer_spaces}
+          #else if $database_type.database_type == "special"
+            --threads \${GALAXY_SLOTS:-1}
+            --special-database-type ${database_type.special_database_type}
+            --kmer-len ${database_type.kmer_len}
+            --minimizer-len ${database_type.minimizer_len}
+            --minimizer-spaces ${database_type.minimizer_spaces}
           #end if
     ]]>
     </command>