Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 4:9f918cce82b2 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 9b4d704c147761201fa9f1450fcf5ba6871104d8-dirty
author dfornika
date Wed, 27 Feb 2019 21:21:30 -0500
parents c8e9fda07f11
children 2eb7850c7434
files data_manager/kraken2_standard_database_builder.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_standard_database_builder.xml	Wed Feb 27 21:19:04 2019 -0500
+++ b/data_manager/kraken2_standard_database_builder.xml	Wed Feb 27 21:21:30 2019 -0500
@@ -11,12 +11,12 @@
         mkdir kraken2_database && cd kraken2_database &&
         kraken2-build \
           --standard \
-          --db ${KRAKEN2_DB_NAME} \
+          --db $KRAKEN2_DB_NAME \
           --kmer-len ${kmer_len} \
           --minimizer-len ${minimizer_len} \
           --minimizer-spaces ${minimizer_spaces} &&
         cd .. &&
-        python '$__tool_directory__/make_json.py' --db ${KRAKEN2_DB_NAME} --out '${out_file}'
+        python '$__tool_directory__/make_json.py' --db $KRAKEN2_DB_NAME --out '${out_file}'
     ]]>
     </command>
     <inputs>