# HG changeset patch
# User dfornika
# Date 1551320490 18000
# Node ID 9f918cce82b2f5a5e3a2c5d56f0394171fc8c8cd
# Parent  c8e9fda07f118506de8864ffbfa6afe335970561
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 9b4d704c147761201fa9f1450fcf5ba6871104d8-dirty

diff -r c8e9fda07f11 -r 9f918cce82b2 data_manager/kraken2_standard_database_builder.xml
--- a/data_manager/kraken2_standard_database_builder.xml	Wed Feb 27 21:19:04 2019 -0500
+++ b/data_manager/kraken2_standard_database_builder.xml	Wed Feb 27 21:21:30 2019 -0500
@@ -11,12 +11,12 @@
         mkdir kraken2_database && cd kraken2_database &&
         kraken2-build \
           --standard \
-          --db ${KRAKEN2_DB_NAME} \
+          --db $KRAKEN2_DB_NAME \
           --kmer-len ${kmer_len} \
           --minimizer-len ${minimizer_len} \
           --minimizer-spaces ${minimizer_spaces} &&
         cd .. &&
-        python '$__tool_directory__/make_json.py' --db ${KRAKEN2_DB_NAME} --out '${out_file}'
+        python '$__tool_directory__/make_json.py' --db $KRAKEN2_DB_NAME --out '${out_file}'
     ]]>
     </command>
     <inputs>