Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 39:9e3394eb1ce9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 5629d9d7d9836d32b1e501277e213ef213de3e76-dirty
author dfornika
date Wed, 01 May 2019 18:03:29 -0400
parents 85d82bbcaca9
children 90e85e2f96b2
files data_manager/kraken2_build_database.py
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_database.py	Wed May 01 18:00:05 2019 -0400
+++ b/data_manager/kraken2_build_database.py	Wed May 01 18:03:29 2019 -0400
@@ -8,6 +8,7 @@
 import json
 import os
 import subprocess
+import sys
 
 from enum import Enum
 
@@ -149,6 +150,7 @@
 
     data_manager_output = {}
 
+    print(args.database_type)
     if args.database_type == 'standard':
         kraken2_args = {
             "kmer_len": args.kmer_len,