Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 40:90e85e2f96b2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 5629d9d7d9836d32b1e501277e213ef213de3e76-dirty
author dfornika
date Wed, 01 May 2019 18:06:51 -0400
parents 9e3394eb1ce9
children 14c17175cbdf
files data_manager/kraken2_build_database.py
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_database.py	Wed May 01 18:03:29 2019 -0400
+++ b/data_manager/kraken2_build_database.py	Wed May 01 18:06:51 2019 -0400
@@ -151,7 +151,7 @@
     data_manager_output = {}
 
     print(args.database_type)
-    if args.database_type == 'standard':
+    if str(args.database_type) == 'standard':
         kraken2_args = {
             "kmer_len": args.kmer_len,
             "minimizer_len": args.minimizer_len,
@@ -163,7 +163,7 @@
             kraken2_args,
             target_directory,
         )
-    elif args.database_type == 'minikraken':
+    elif str(args.database_type) == 'minikraken':
         kraken2_build_minikraken(
             data_manager_output,
             args.minikraken2_version,