Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 11:6736d495130e draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 682a16af9bce01ff23176dbce291034d67947e58-dirty
author dfornika
date Thu, 28 Feb 2019 01:27:28 -0500
parents 7cea257d1e77
children 412d72bbd9e6
files data_manager/kraken2_build_standard.py
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_standard.py	Thu Feb 28 01:24:15 2019 -0500
+++ b/data_manager/kraken2_build_standard.py	Thu Feb 28 01:27:28 2019 -0500
@@ -5,13 +5,13 @@
 import argparse
 import datetime
 import errno
+import json
 import os
 import string
 import subprocess
 import sys
 
-from json import dumps, loads
-
+from pprint import pprint
 
 DATA_TABLE_NAME = "kraken2_databases"
 
@@ -58,6 +58,7 @@
     args = parser.parse_args()
 
     params = json.loads(open(args.params).read())
+    pprint(params)
     target_directory = params['output_data'][0]['extra_files_path']
 
     try: