Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 35:40b2c0a4abd5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 5629d9d7d9836d32b1e501277e213ef213de3e76-dirty
author dfornika
date Wed, 01 May 2019 17:31:07 -0400
parents 8d8ebf8367c8
children 2190442bf6db
files data_manager/kraken2_build_database.xml
diffstat 1 files changed, 8 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_database.xml	Wed May 01 16:46:36 2019 -0400
+++ b/data_manager/kraken2_build_database.xml	Wed May 01 17:31:07 2019 -0400
@@ -16,10 +16,14 @@
     <![CDATA[
         python '$__tool_directory__/kraken2_build_database.py'
           '${out_file}'
-          --threads \${GALAXY_SLOTS:-1}
-          --kmer-len ${kmer_len}
-          --minimizer-len ${minimizer_len}
-          --minimizer-spaces ${minimizer_spaces}
+          #if $database_type.database_type == "minikraken"
+            --minikraken2-version ${minikraken2_version}
+          #else if $database_type.database_type == "standard"
+            --threads \${GALAXY_SLOTS:-1}
+            --kmer-len ${kmer_len}
+            --minimizer-len ${minimizer_len}
+            --minimizer-spaces ${minimizer_spaces}
+          #end if
     ]]>
     </command>
     <inputs>