# HG changeset patch
# User dfornika
# Date 1556746267 14400
# Node ID 40b2c0a4abd529e2c6aabfda6a90e64636f83e0e
# Parent  8d8ebf8367c8accc330741d0caa51d67973fe66a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 5629d9d7d9836d32b1e501277e213ef213de3e76-dirty

diff -r 8d8ebf8367c8 -r 40b2c0a4abd5 data_manager/kraken2_build_database.xml
--- a/data_manager/kraken2_build_database.xml	Wed May 01 16:46:36 2019 -0400
+++ b/data_manager/kraken2_build_database.xml	Wed May 01 17:31:07 2019 -0400
@@ -16,10 +16,14 @@
     <![CDATA[
         python '$__tool_directory__/kraken2_build_database.py'
           '${out_file}'
-          --threads \${GALAXY_SLOTS:-1}
-          --kmer-len ${kmer_len}
-          --minimizer-len ${minimizer_len}
-          --minimizer-spaces ${minimizer_spaces}
+          #if $database_type.database_type == "minikraken"
+            --minikraken2-version ${minikraken2_version}
+          #else if $database_type.database_type == "standard"
+            --threads \${GALAXY_SLOTS:-1}
+            --kmer-len ${kmer_len}
+            --minimizer-len ${minimizer_len}
+            --minimizer-spaces ${minimizer_spaces}
+          #end if
     ]]>
     </command>
     <inputs>