Mercurial > repos > dfornika > data_manager_build_kraken2_database
changeset 66:256263500df9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 932a50fe0274d210ab9e3211719fa3ee09afc872-dirty"
| author | dfornika |
|---|---|
| date | Thu, 04 Nov 2021 17:16:26 +0000 |
| parents | 1381471bb6e5 |
| children | 5f491c4bccae |
| files | data_manager/kraken2_build_database.py data_manager_conf.xml |
| diffstat | 2 files changed, 7 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/kraken2_build_database.py Thu Nov 04 00:10:46 2021 +0000 +++ b/data_manager/kraken2_build_database.py Thu Nov 04 17:16:26 2021 +0000 @@ -380,7 +380,7 @@ data_manager_output = {} - if str(args.database_type) == 'standard': + if str(args.database_type) == 'standard_local_build': kraken2_args = { "kmer_len": args.kmer_len, "minimizer_len": args.minimizer_len, @@ -393,6 +393,11 @@ kraken2_args, target_directory, ) + elif str(args.database_type) == 'standard_prebuilt': + data_manager_output = kraken2_build_standard_prebuilt( + str(args.standard_prebuilt_size), + target_directory + ) elif str(args.database_type) == 'minikraken': data_manager_output = kraken2_build_minikraken( str(args.minikraken2_version),
--- a/data_manager_conf.xml Thu Nov 04 00:10:46 2021 +0000 +++ b/data_manager_conf.xml Thu Nov 04 17:16:26 2021 +0000 @@ -1,5 +1,5 @@ <data_managers> - <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="2.1.1+galaxy1"> + <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="2.1.1+galaxy0"> <data_table name="kraken2_databases"> <output> <column name="value"/>