# HG changeset patch
# User dfornika
# Date 1636046186 0
# Node ID 256263500df9a0c3db4429d26e1d6827228768b5
# Parent  1381471bb6e57fd42748a0d72f0334cb8aafb05c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 932a50fe0274d210ab9e3211719fa3ee09afc872-dirty"

diff -r 1381471bb6e5 -r 256263500df9 data_manager/kraken2_build_database.py
--- a/data_manager/kraken2_build_database.py	Thu Nov 04 00:10:46 2021 +0000
+++ b/data_manager/kraken2_build_database.py	Thu Nov 04 17:16:26 2021 +0000
@@ -380,7 +380,7 @@
 
     data_manager_output = {}
 
-    if str(args.database_type) == 'standard':
+    if str(args.database_type) == 'standard_local_build':
         kraken2_args = {
             "kmer_len": args.kmer_len,
             "minimizer_len": args.minimizer_len,
@@ -393,6 +393,11 @@
             kraken2_args,
             target_directory,
         )
+    elif str(args.database_type) == 'standard_prebuilt':
+        data_manager_output = kraken2_build_standard_prebuilt(
+            str(args.standard_prebuilt_size),
+            target_directory
+        )
     elif str(args.database_type) == 'minikraken':
         data_manager_output = kraken2_build_minikraken(
             str(args.minikraken2_version),
diff -r 1381471bb6e5 -r 256263500df9 data_manager_conf.xml
--- a/data_manager_conf.xml	Thu Nov 04 00:10:46 2021 +0000
+++ b/data_manager_conf.xml	Thu Nov 04 17:16:26 2021 +0000
@@ -1,5 +1,5 @@
 <data_managers>
-    <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="2.1.1+galaxy1">
+    <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="2.1.1+galaxy0">
         <data_table name="kraken2_databases">
             <output>
                 <column name="value"/>