Mercurial > repos > dfornika > data_manager_build_kraken2_database
changeset 7:1088e1592527 draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 9b4d704c147761201fa9f1450fcf5ba6871104d8-dirty
| author | dfornika |
|---|---|
| date | Wed, 27 Feb 2019 22:00:10 -0500 |
| parents | 2ea60e272b90 |
| children | 85447ce51182 |
| files | data_manager/kraken2_standard_database_builder.xml |
| diffstat | 1 files changed, 8 insertions(+), 8 deletions(-) [+] |
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--- a/data_manager/kraken2_standard_database_builder.xml Wed Feb 27 21:50:03 2019 -0500 +++ b/data_manager/kraken2_standard_database_builder.xml Wed Feb 27 22:00:10 2019 -0500 @@ -8,15 +8,15 @@ <command detect_errors="exit_code"> <![CDATA[ #import datetime - #set kraken2_db_name = datetime.date.today().strftime('%Y-%m-%d') + #set kraken2_db_name = datetime.date.today().strftime('%Y-%m-%d') + "_standard" mkdir kraken2_database && cd kraken2_database && - kraken2-build \ - --standard \ - --threads \${GALAXY_SLOTS:-1} \ - --db '${kraken2_db_name}' \ - --kmer-len '${kmer_len}' \ - --minimizer-len '${minimizer_len}' \ - --minimizer-spaces '${minimizer_spaces}' && + kraken2-build + --standard + --threads \${GALAXY_SLOTS:-1} + --db '${kraken2_db_name}' + --kmer-len ${kmer_len} + --minimizer-len ${minimizer_len} + --minimizer-spaces ${minimizer_spaces} && cd .. && python '$__tool_directory__/make_json.py' --db '${kraken2_db_name}' --out '${out_file}' ]]>