# HG changeset patch
# User dfornika
# Date 1551322810 18000
# Node ID 1088e159252768c49862997bad022f327f25c0ae
# Parent  2ea60e272b907e0bfa24810287d4a25d7f75dcb7
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 9b4d704c147761201fa9f1450fcf5ba6871104d8-dirty

diff -r 2ea60e272b90 -r 1088e1592527 data_manager/kraken2_standard_database_builder.xml
--- a/data_manager/kraken2_standard_database_builder.xml	Wed Feb 27 21:50:03 2019 -0500
+++ b/data_manager/kraken2_standard_database_builder.xml	Wed Feb 27 22:00:10 2019 -0500
@@ -8,15 +8,15 @@
     <command detect_errors="exit_code">
     <![CDATA[
         #import datetime
-	#set kraken2_db_name = datetime.date.today().strftime('%Y-%m-%d')
+	#set kraken2_db_name = datetime.date.today().strftime('%Y-%m-%d') + "_standard"
         mkdir kraken2_database && cd kraken2_database &&
-        kraken2-build \
-          --standard \
-	  --threads \${GALAXY_SLOTS:-1} \
-          --db '${kraken2_db_name}' \
-          --kmer-len '${kmer_len}' \
-          --minimizer-len '${minimizer_len}' \
-          --minimizer-spaces '${minimizer_spaces}' &&
+        kraken2-build 
+          --standard
+	  --threads \${GALAXY_SLOTS:-1}
+          --db '${kraken2_db_name}'
+          --kmer-len ${kmer_len}
+          --minimizer-len ${minimizer_len}
+          --minimizer-spaces ${minimizer_spaces} &&
         cd .. &&
         python '$__tool_directory__/make_json.py' --db '${kraken2_db_name}' --out '${out_file}'
     ]]>