Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 60:0e635abf01ff draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 66c35bd1ec30e6cd16d16f3cc98c2c5b56533a48-dirty
author dfornika
date Fri, 26 Jul 2019 19:54:59 -0400
parents 5b355fcb1058
children bf6408089cbc
files data_manager/kraken2_build_database.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_database.xml	Fri Jul 26 19:51:21 2019 -0400
+++ b/data_manager/kraken2_build_database.xml	Fri Jul 26 19:54:59 2019 -0400
@@ -25,14 +25,14 @@
             --kmer-len ${database_type.kmer_len}
             --minimizer-len ${database_type.minimizer_len}
             --minimizer-spaces ${database_type.minimizer_spaces}
-            ${clean}
+            ${database_type.clean}
           #else if $database_type.database_type == "special"
             --threads \${GALAXY_SLOTS:-1}
             --special-database-type ${database_type.special_database_type}
             --kmer-len ${database_type.kmer_len}
             --minimizer-len ${database_type.minimizer_len}
             --minimizer-spaces ${database_type.minimizer_spaces}
-            ${clean}
+            ${database_type.clean}
           #else if $database_type.database_type == "custom"
             --threads \${GALAXY_SLOTS:-1}
             ${database_type.skip_maps}
@@ -41,7 +41,7 @@
             --kmer-len ${database_type.kmer_len}
             --minimizer-len ${database_type.minimizer_len}
             --minimizer-spaces ${database_type.minimizer_spaces}
-            ${clean}
+            ${database_type.clean}
           #end if
     ]]>
     </command>