# HG changeset patch
# User dfornika
# Date 1564185299 14400
# Node ID 0e635abf01ff6c86152c088a93aec2aa2edbf7ef
# Parent  5b355fcb1058419c6c6aa2deb0f4b07713b290e2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 66c35bd1ec30e6cd16d16f3cc98c2c5b56533a48-dirty

diff -r 5b355fcb1058 -r 0e635abf01ff data_manager/kraken2_build_database.xml
--- a/data_manager/kraken2_build_database.xml	Fri Jul 26 19:51:21 2019 -0400
+++ b/data_manager/kraken2_build_database.xml	Fri Jul 26 19:54:59 2019 -0400
@@ -25,14 +25,14 @@
             --kmer-len ${database_type.kmer_len}
             --minimizer-len ${database_type.minimizer_len}
             --minimizer-spaces ${database_type.minimizer_spaces}
-            ${clean}
+            ${database_type.clean}
           #else if $database_type.database_type == "special"
             --threads \${GALAXY_SLOTS:-1}
             --special-database-type ${database_type.special_database_type}
             --kmer-len ${database_type.kmer_len}
             --minimizer-len ${database_type.minimizer_len}
             --minimizer-spaces ${database_type.minimizer_spaces}
-            ${clean}
+            ${database_type.clean}
           #else if $database_type.database_type == "custom"
             --threads \${GALAXY_SLOTS:-1}
             ${database_type.skip_maps}
@@ -41,7 +41,7 @@
             --kmer-len ${database_type.kmer_len}
             --minimizer-len ${database_type.minimizer_len}
             --minimizer-spaces ${database_type.minimizer_spaces}
-            ${clean}
+            ${database_type.clean}
           #end if
     ]]>
     </command>