Mercurial > repos > dfornika > chewbbaca_createschema
changeset 12:64a7d9e95445 draft
Uploaded
author | dfornika |
---|---|
date | Fri, 21 Feb 2020 01:55:12 +0000 |
parents | c9bcb49cd0e2 |
children | 35ee71a46436 |
files | chewbbaca_createschema.xml |
diffstat | 1 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/chewbbaca_createschema.xml Fri Feb 21 01:48:11 2020 +0000 +++ b/chewbbaca_createschema.xml Fri Feb 21 01:55:12 2020 +0000 @@ -4,12 +4,13 @@ <requirement type="package" version="2.1.0">chewbbaca</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ + mkdir assemblies && + #for $assembly in $assemblies: + ln -s $assembly assemblies && + #end for chewBBACA.py CreateSchema --cpu \${GALAXY_SLOTS:-1} - -i - #for $assembly in $assemblies: - $assembly - #end for + -i assemblies #if str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'tool_data_table': --ptf '${prodigal_training_file_source.prodigal_training_file.fields.path}' #elif str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'history':