# HG changeset patch
# User dfornika
# Date 1582250112 0
# Node ID 64a7d9e95445d7c9c3780efce8031a46f63eb374
# Parent  c9bcb49cd0e2ee2d21c95ebfc3dbe3dd7fb06a1c
Uploaded

diff -r c9bcb49cd0e2 -r 64a7d9e95445 chewbbaca_createschema.xml
--- a/chewbbaca_createschema.xml	Fri Feb 21 01:48:11 2020 +0000
+++ b/chewbbaca_createschema.xml	Fri Feb 21 01:55:12 2020 +0000
@@ -4,12 +4,13 @@
         <requirement type="package" version="2.1.0">chewbbaca</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+        mkdir assemblies &&
+        #for $assembly in $assemblies:
+          ln -s $assembly assemblies &&
+        #end for
         chewBBACA.py CreateSchema
           --cpu \${GALAXY_SLOTS:-1}
-          -i 
-          #for $assembly in $assemblies:
-            $assembly
-          #end for
+          -i assemblies
           #if str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'tool_data_table':
             --ptf '${prodigal_training_file_source.prodigal_training_file.fields.path}'
           #elif str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'history':