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1 <tool id="chewbbaca_prepexternalschema" name="chewBBACA PrepExternalSchema" version="@TOOL_VERSION@+galaxy0">
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2 <description>Adapt an external schema to be used with chewBBACA.</description>
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3 <requirements>
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4 <requirement type="package" version="@TOOL_VERSION@">chewbbaca</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 chewBBACA.py PrepExternalSchema
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8 --cpu \${GALAXY_SLOTS:-1}
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9 -i '${input_files}'
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10 #if str( translation_table ) != "":
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11 --tbl '${translation_table}'
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12 #end if
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13 --bsr '${bsr}'
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14 --len '${len}'
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15 -o schema
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16 && tar -czf schema.tgz schema
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17 ]]>
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18 </command>
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19 <inputs>
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20 <param name="input_files" format="fasta" type="data" multiple="true" label="Schema files (fasta)" />
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21 <param name="bsr" type="float" value="0.6" optional="true" label="BSR score" />
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22 <param name="min_len" type="integer" min="1" value="100" max="100000" optional="true" label="Minimum length" />
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23 </inputs>
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24 <outputs>
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25 <data name="schema_zipped" format="zip" label="${tool.name}: on ${on_string}: Schema (zipped)" from_work_dir="schema.tgz"/>
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26 </outputs>
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27 <tests>
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28
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29 </tests>
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30 <help><![CDATA[
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31 ]]>
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32 </help>
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33 <expand macro="citations"/>
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34 </tool>
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