Mercurial > repos > dfornika > chewbbaca_createschema
diff chewbbaca_createschema.xml @ 0:470f58372a68 draft
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author | dfornika |
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date | Fri, 21 Feb 2020 01:09:27 +0000 |
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children | fed8439686cb |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/chewbbaca_createschema.xml Fri Feb 21 01:09:27 2020 +0000 @@ -0,0 +1,34 @@ +<tool id="chewbbaca_prepexternalschema" name="chewBBACA PrepExternalSchema" version="@TOOL_VERSION@+galaxy0"> + <description>Adapt an external schema to be used with chewBBACA.</description> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">chewbbaca</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + chewBBACA.py PrepExternalSchema + --cpu \${GALAXY_SLOTS:-1} + -i '${input_files}' + #if str( translation_table ) != "": + --tbl '${translation_table}' + #end if + --bsr '${bsr}' + --len '${len}' + -o schema + && tar -czf schema.tgz schema + ]]> + </command> + <inputs> + <param name="input_files" format="fasta" type="data" multiple="true" label="Schema files (fasta)" /> + <param name="bsr" type="float" value="0.6" optional="true" label="BSR score" /> + <param name="min_len" type="integer" min="1" value="100" max="100000" optional="true" label="Minimum length" /> + </inputs> + <outputs> + <data name="schema_zipped" format="zip" label="${tool.name}: on ${on_string}: Schema (zipped)" from_work_dir="schema.tgz"/> + </outputs> + <tests> + + </tests> + <help><![CDATA[ + ]]> + </help> + <expand macro="citations"/> +</tool>