Mercurial > repos > dfornika > cgview
changeset 8:fece9758fea4 draft
"planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit 62e7cd82cb9b209bf3f797ae288916e88bbe8bc6-dirty"
| author | dfornika |
|---|---|
| date | Fri, 01 Nov 2019 21:20:45 -0400 |
| parents | 1393e1b26f0b |
| children | a1018c7f80d1 |
| files | cgview_xml_builder.xml |
| diffstat | 1 files changed, 11 insertions(+), 1 deletions(-) [+] |
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--- a/cgview_xml_builder.xml Mon Jul 08 23:23:58 2019 -0400 +++ b/cgview_xml_builder.xml Fri Nov 01 21:20:45 2019 -0400 @@ -6,13 +6,23 @@ <command detect_errors="exit_code"> <![CDATA[ cgview_xml_builder.pl + -gc_content $gc_content + -gc_skew $gc_skew + -at_content $at_content + -at_skew $at_skew + -average $average -sequence '${reference}' -blast '${blast_output}' -output '${output}' ]]> </command> <inputs> - <param name="reference" type="data" format="genbank,fasta" label="Input" help=""/> + <param name="reference" type="data" format="genbank,fasta" label="Reference" help=""/> + <param name="gc_content" type="boolean" truevalue="T" falsevalue="F" label="Display GC Content" checked="true" help=""/> + <param name="gc_skew" type="boolean" truevalue="T" falsevalue="F" label="Display GC Skew" checked="false" help=""/> + <param name="at_content" type="boolean" truevalue="T" falsevalue="F" label="Display AT Content" checked="false" help=""/> + <param name="at_skew" type="boolean" truevalue="T" falsevalue="F" label="Display AT Skew" checked="false" help=""/> + <param name="average" type="boolean" truevalue="T" falsevalue="F" label="Display deviation of GC and AT values from the average for the entire genome." checked="true" help=""/> <param name="blast_output" type="data" format="tabular" /> </inputs> <outputs>