# HG changeset patch
# User dfornika
# Date 1572657645 14400
# Node ID fece9758fea4e78a538c0919fc411589d4eb945a
# Parent  1393e1b26f0be0b4b509be20b0c0cea7dc258c28
"planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit 62e7cd82cb9b209bf3f797ae288916e88bbe8bc6-dirty"

diff -r 1393e1b26f0b -r fece9758fea4 cgview_xml_builder.xml
--- a/cgview_xml_builder.xml	Mon Jul 08 23:23:58 2019 -0400
+++ b/cgview_xml_builder.xml	Fri Nov 01 21:20:45 2019 -0400
@@ -6,13 +6,23 @@
     <command detect_errors="exit_code">
         <![CDATA[
           cgview_xml_builder.pl
+           -gc_content $gc_content
+           -gc_skew $gc_skew
+           -at_content $at_content
+           -at_skew $at_skew
+           -average $average
            -sequence '${reference}'
            -blast '${blast_output}'
            -output '${output}'
         ]]>  
     </command>
     <inputs>
-        <param name="reference" type="data" format="genbank,fasta" label="Input" help=""/>
+        <param name="reference" type="data" format="genbank,fasta" label="Reference" help=""/>
+        <param name="gc_content" type="boolean" truevalue="T" falsevalue="F" label="Display GC Content" checked="true" help=""/>
+	<param name="gc_skew" type="boolean" truevalue="T" falsevalue="F" label="Display GC Skew" checked="false" help=""/>
+	<param name="at_content" type="boolean" truevalue="T" falsevalue="F" label="Display AT Content" checked="false" help=""/>
+	<param name="at_skew" type="boolean" truevalue="T" falsevalue="F" label="Display AT Skew" checked="false" help=""/>
+	<param name="average" type="boolean" truevalue="T" falsevalue="F" label="Display deviation of GC and AT values from the average for the entire genome." checked="true" help=""/>
         <param name="blast_output" type="data" format="tabular" />
     </inputs>
     <outputs>