Mercurial > repos > dfornika > blast_report_basic

changeset 26:e2cab62e1943 draft

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Uploaded
author dfornika
date Tue, 03 Mar 2020 09:57:34 +0000
parents d29bf2f7da9d
children efa564587d12
files blast_report.py
diffstat 1 files changed, 4 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/blast_report.py	Tue Mar 03 09:47:38 2020 +0000
+++ b/blast_report.py	Tue Mar 03 09:57:34 2020 +0000
@@ -4,7 +4,7 @@
 
 '''Report on BLAST results.
 
-python blast_report.py input_tab cheetah_tmpl output_html output_tab [-i [min_identity]] [-f filterkw1,...,filterkwN]] [-b bin1_label=bin1_path[,...binN_label=binN_path]]
+python blast_report.py input_tab cheetah_tmpl output_html output_tab [-i [min_identity]] [-f filterkw1,...,filterkwN]] [-b bin1_label bin1_path[,...binN_label binN_path]]
 '''
 
 import argparse
@@ -105,7 +105,9 @@
 #BINS
 bins=[]
 if args.bins != None:
-    bins = list([BLASTBin(label_file.split('=')[0],label_file.split('=')[-1]) for label_file in args.bins.split(',')])
+    for bin in args.bins:
+        bins.append(BLASTBin(bin[0], bin[1])
+
 print('database bins: %s' % str([bin.label for bin in bins]))
 
 #FILTERS