# HG changeset patch
# User dfornika
# Date 1583229454 0
# Node ID e2cab62e194309c7c501e7d0c2cb050f7448ae00
# Parent  d29bf2f7da9d4ed7543301a3a6ac3e016a5d0969
Uploaded

diff -r d29bf2f7da9d -r e2cab62e1943 blast_report.py
--- a/blast_report.py	Tue Mar 03 09:47:38 2020 +0000
+++ b/blast_report.py	Tue Mar 03 09:57:34 2020 +0000
@@ -4,7 +4,7 @@
 
 '''Report on BLAST results.
 
-python blast_report.py input_tab cheetah_tmpl output_html output_tab [-i [min_identity]] [-f filterkw1,...,filterkwN]] [-b bin1_label=bin1_path[,...binN_label=binN_path]]
+python blast_report.py input_tab cheetah_tmpl output_html output_tab [-i [min_identity]] [-f filterkw1,...,filterkwN]] [-b bin1_label bin1_path[,...binN_label binN_path]]
 '''
 
 import argparse
@@ -105,7 +105,9 @@
 #BINS
 bins=[]
 if args.bins != None:
-    bins = list([BLASTBin(label_file.split('=')[0],label_file.split('=')[-1]) for label_file in args.bins.split(',')])
+    for bin in args.bins:
+        bins.append(BLASTBin(bin[0], bin[1])
+
 print('database bins: %s' % str([bin.label for bin in bins]))
 
 #FILTERS