Mercurial > repos > dfornika > artic_align_trim

changeset 9:4a7233b0a795 draft

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/artic_align_trim commit 374121821497c96c8450afda266951c2f431ba11-dirty"
author dfornika
date Tue, 10 Mar 2020 23:25:47 +0000
parents e015f2244d4f
children 1ae3d853cac8
files artic_align_trim.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/artic_align_trim.xml	Tue Mar 10 23:21:37 2020 +0000
+++ b/artic_align_trim.xml	Tue Mar 10 23:25:47 2020 +0000
@@ -19,7 +19,7 @@
             < '${input_alignment}'
             2> '${end_trim_err}' |
         samtools view -bS - |
-        samtools sort - -o '${end_trimmed_sorted_alignment}' &&
+        samtools sort - -o '${end_trimmed_sorted_alignment}'
     ]]></command>
     <inputs>
         <param name="input_alignment" type="data" format="bam" label="Input Alignment"/>