# HG changeset patch
# User dfornika
# Date 1583882747 0
# Node ID 4a7233b0a795effcf554186654fa0d5e0562619d
# Parent  e015f2244d4fc04f1d681ad6de7ac16bdccef935
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/artic_align_trim commit 374121821497c96c8450afda266951c2f431ba11-dirty"

diff -r e015f2244d4f -r 4a7233b0a795 artic_align_trim.xml
--- a/artic_align_trim.xml	Tue Mar 10 23:21:37 2020 +0000
+++ b/artic_align_trim.xml	Tue Mar 10 23:25:47 2020 +0000
@@ -19,7 +19,7 @@
             < '${input_alignment}'
             2> '${end_trim_err}' |
         samtools view -bS - |
-        samtools sort - -o '${end_trimmed_sorted_alignment}' &&
+        samtools sort - -o '${end_trimmed_sorted_alignment}'
     ]]></command>
     <inputs>
         <param name="input_alignment" type="data" format="bam" label="Input Alignment"/>