Mercurial > repos > devteam > samtools_rmdup
changeset 3:d67b176f2dae draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_rmdup commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
| author | devteam |
|---|---|
| date | Fri, 18 Dec 2015 19:46:01 -0500 |
| parents | b1b367792034 |
| children | c2549832fb33 |
| files | macros.xml samtools_rmdup.xml tool_dependencies.xml |
| diffstat | 3 files changed, 6 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Tue Oct 13 12:55:32 2015 -0400 +++ b/macros.xml Fri Dec 18 19:46:01 2015 -0500 @@ -41,7 +41,7 @@ </citations> </xml> <xml name="version_command"> - <version_command>samtools --version | head -n 1 | awk '{ print $2 }'</version_command> + <version_command>echo $(samtools --version | head -n 1)", "$(samtools --version | grep -o -E "htslib.*?")</version_command> </xml> <xml name="stdio"> <stdio>
--- a/samtools_rmdup.xml Tue Oct 13 12:55:32 2015 -0400 +++ b/samtools_rmdup.xml Fri Dec 18 19:46:01 2015 -0500 @@ -3,7 +3,9 @@ <macros> <import>macros.xml</import> </macros> - <expand macro="requirements"></expand> + <requirements> + <requirement type="package" version="0.1.19">samtools</requirement> + </requirements> <expand macro="stdio"></expand> <expand macro="version_command"></expand> <command>samtools rmdup
--- a/tool_dependencies.xml Tue Oct 13 12:55:32 2015 -0400 +++ b/tool_dependencies.xml Fri Dec 18 19:46:01 2015 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="samtools" version="1.2"> - <repository changeset_revision="192f00129358" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="samtools" version="0.1.19"> + <repository changeset_revision="0e56e4dac6e7" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>