# HG changeset patch
# User devteam
# Date 1450485961 18000
# Node ID d67b176f2dae968b082aa88010f1875cf3fa7d2b
# Parent  b1b3677920346da3032f1ebc115177a2a57d7003
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_rmdup commit de7140295cce07e1bc1697e51dab4271c8d7a8a6

diff -r b1b367792034 -r d67b176f2dae macros.xml
--- a/macros.xml	Tue Oct 13 12:55:32 2015 -0400
+++ b/macros.xml	Fri Dec 18 19:46:01 2015 -0500
@@ -41,7 +41,7 @@
         </citations>
     </xml>
     <xml name="version_command">
-        <version_command>samtools --version | head -n 1 | awk '{ print $2 }'</version_command>
+        <version_command>echo $(samtools --version | head -n 1)", "$(samtools --version | grep -o -E "htslib.*?")</version_command>
     </xml>
     <xml name="stdio">
         <stdio>
diff -r b1b367792034 -r d67b176f2dae samtools_rmdup.xml
--- a/samtools_rmdup.xml	Tue Oct 13 12:55:32 2015 -0400
+++ b/samtools_rmdup.xml	Fri Dec 18 19:46:01 2015 -0500
@@ -3,7 +3,9 @@
   <macros>
     <import>macros.xml</import>
   </macros>
-  <expand macro="requirements"></expand>
+  <requirements>
+    <requirement type="package" version="0.1.19">samtools</requirement>
+  </requirements>
   <expand macro="stdio"></expand>
   <expand macro="version_command"></expand>
   <command>samtools rmdup 
diff -r b1b367792034 -r d67b176f2dae tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Oct 13 12:55:32 2015 -0400
+++ b/tool_dependencies.xml	Fri Dec 18 19:46:01 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="samtools" version="1.2">
-        <repository changeset_revision="192f00129358" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="samtools" version="0.1.19">
+        <repository changeset_revision="0e56e4dac6e7" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>