Mercurial > repos > devteam > samtools_flagstat
changeset 3:480404be9626 draft
Uploaded version 1.0.3 for samtools 1.1
| author | devteam |
|---|---|
| date | Fri, 26 Sep 2014 14:35:56 -0400 |
| parents | 728e2ed819a1 |
| children | 10b658bef71a |
| files | samtools_flagstat.xml test-data/samtools_flagstat_out1.txt tool_dependencies.xml |
| diffstat | 3 files changed, 7 insertions(+), 5 deletions(-) [+] |
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--- a/samtools_flagstat.xml Wed Sep 24 11:26:48 2014 -0400 +++ b/samtools_flagstat.xml Fri Sep 26 14:35:56 2014 -0400 @@ -1,6 +1,6 @@ -<tool id="samtools_flagstat" name="flagstat" version="1.0.2"> +<tool id="samtools_flagstat" name="flagstat" version="1.0.3"> <requirements> - <requirement type="package" version="1.0">samtools</requirement> + <requirement type="package" version="1.1">samtools</requirement> </requirements> <description>provides simple stats on BAM files</description> <command>samtools flagstat "$input1" > "$output1" @@ -34,4 +34,4 @@ If you use this tool in Galaxy, please cite Blankenberg D, et al. *In preparation.* </help> -</tool> \ No newline at end of file +</tool>
--- a/test-data/samtools_flagstat_out1.txt Wed Sep 24 11:26:48 2014 -0400 +++ b/test-data/samtools_flagstat_out1.txt Fri Sep 26 14:35:56 2014 -0400 @@ -1,4 +1,6 @@ 10 + 0 in total (QC-passed reads + QC-failed reads) +0 + 0 secondary +0 + 0 supplimentary 0 + 0 duplicates 10 + 0 mapped (100.00%:-nan%) 0 + 0 paired in sequencing
--- a/tool_dependencies.xml Wed Sep 24 11:26:48 2014 -0400 +++ b/tool_dependencies.xml Fri Sep 26 14:35:56 2014 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="samtools" version="1.0"> - <repository changeset_revision="da217d52e81c" name="package_samtools_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="samtools" version="1.1"> + <repository changeset_revision="c01b111a243b" name="package_samtools_1_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>