# HG changeset patch # User devteam # Date 1411756556 14400 # Node ID 480404be9626c5d7f660a9625e4f3a925e6fe43c # Parent 728e2ed819a1452b47c1611ce44d946bc6f2096a Uploaded version 1.0.3 for samtools 1.1 diff -r 728e2ed819a1 -r 480404be9626 samtools_flagstat.xml --- a/samtools_flagstat.xml Wed Sep 24 11:26:48 2014 -0400 +++ b/samtools_flagstat.xml Fri Sep 26 14:35:56 2014 -0400 @@ -1,6 +1,6 @@ - + - samtools + samtools provides simple stats on BAM files samtools flagstat "$input1" > "$output1" @@ -34,4 +34,4 @@ If you use this tool in Galaxy, please cite Blankenberg D, et al. *In preparation.* - \ No newline at end of file + diff -r 728e2ed819a1 -r 480404be9626 test-data/samtools_flagstat_out1.txt --- a/test-data/samtools_flagstat_out1.txt Wed Sep 24 11:26:48 2014 -0400 +++ b/test-data/samtools_flagstat_out1.txt Fri Sep 26 14:35:56 2014 -0400 @@ -1,4 +1,6 @@ 10 + 0 in total (QC-passed reads + QC-failed reads) +0 + 0 secondary +0 + 0 supplimentary 0 + 0 duplicates 10 + 0 mapped (100.00%:-nan%) 0 + 0 paired in sequencing diff -r 728e2ed819a1 -r 480404be9626 tool_dependencies.xml --- a/tool_dependencies.xml Wed Sep 24 11:26:48 2014 -0400 +++ b/tool_dependencies.xml Fri Sep 26 14:35:56 2014 -0400 @@ -1,6 +1,6 @@ - - + +