Mercurial > repos > devteam > samtools_flagstat

annotate test-data/samtools_flagstat_out1.txt @ 10:9b44224f5a76 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:02:06 +0000
parents 28eb6a47be96
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
1 200 + 0 in total (QC-passed reads + QC-failed reads)
10
9b44224f5a76 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents: 6
diff changeset
2 200 + 0 primary
3
480404be9626 Uploaded version 1.0.3 for samtools 1.1
devteam
parents: 2
diff changeset
3 0 + 0 secondary
4
10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
4 0 + 0 supplementary
0
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
5 0 + 0 duplicates
10
9b44224f5a76 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents: 6
diff changeset
6 0 + 0 primary duplicates
6
28eb6a47be96 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents: 4
diff changeset
7 25 + 0 mapped (12.50% : N/A)
10
9b44224f5a76 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents: 6
diff changeset
8 25 + 0 primary mapped (12.50% : N/A)
4
10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
9 200 + 0 paired in sequencing
10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
10 100 + 0 read1
10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
11 100 + 0 read2
6
28eb6a47be96 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents: 4
diff changeset
12 0 + 0 properly paired (0.00% : N/A)
0
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
13 0 + 0 with itself and mate mapped
6
28eb6a47be96 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents: 4
diff changeset
14 25 + 0 singletons (12.50% : N/A)
0
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
15 0 + 0 with mate mapped to a different chr
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
16 0 + 0 with mate mapped to a different chr (mapQ>=5)