Mercurial > repos > devteam > samtools_flagstat
annotate test-data/samtools_flagstat_out1.txt @ 6:28eb6a47be96 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
author | iuc |
---|---|
date | Tue, 09 May 2017 11:16:36 -0400 |
parents | 10b658bef71a |
children | 9b44224f5a76 |
rev | line source |
---|---|
4
10b658bef71a
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents:
3
diff
changeset
|
1 200 + 0 in total (QC-passed reads + QC-failed reads) |
3 | 2 0 + 0 secondary |
4
10b658bef71a
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents:
3
diff
changeset
|
3 0 + 0 supplementary |
0 | 4 0 + 0 duplicates |
6
28eb6a47be96
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents:
4
diff
changeset
|
5 25 + 0 mapped (12.50% : N/A) |
4
10b658bef71a
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents:
3
diff
changeset
|
6 200 + 0 paired in sequencing |
10b658bef71a
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents:
3
diff
changeset
|
7 100 + 0 read1 |
10b658bef71a
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents:
3
diff
changeset
|
8 100 + 0 read2 |
6
28eb6a47be96
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents:
4
diff
changeset
|
9 0 + 0 properly paired (0.00% : N/A) |
0 | 10 0 + 0 with itself and mate mapped |
6
28eb6a47be96
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents:
4
diff
changeset
|
11 25 + 0 singletons (12.50% : N/A) |
0 | 12 0 + 0 with mate mapped to a different chr |
13 0 + 0 with mate mapped to a different chr (mapQ>=5) |