Mercurial > repos > devteam > package_emboss_5_0_0

annotate tool_dependencies.xml @ 3:0e97d4936c23 draft

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Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
author devteam
date Mon, 22 Jul 2013 14:20:37 -0400
parents 3569b0e8a8c1
children be713681f50f
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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1 <?xml version="1.0"?>
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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2 <tool_dependency>
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3 <package name="libx11" version="1.5.0">
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0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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4 <repository changeset_revision="11623237372f" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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5 </package>
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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6 <package name="emboss" version="5.0.0">
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7 <install version="1.0">
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8 <actions>
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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9 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="11623237372f" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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12 <package name="libx11" version="1.5.0" />
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13 </repository>
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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14 </action>
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0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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15 <action language="cheetah" type="template_command">
0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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16 #if env.get('X11_LIB_DIR', False) and env.get('X11_INCLUDE_DIR', False):
0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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17 ./configure --prefix=$env.INSTALL_DIR --x-includes=$env.X11_INCLUDE_DIR --x-libraries=$env.X11_LIB_DIR
0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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18 #else:
0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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19 ./configure --prefix=$env.INSTALL_DIR
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20 #end if
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21 </action>
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22 <action type="shell_command">make &amp;&amp; make install</action>
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23 <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
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24 <action type="change_directory">PHYLIP-3.6b</action>
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0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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25 <action language="cheetah" type="template_command">
0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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26 #if env.get('X11_LIB_DIR', False) and env.get('X11_INCLUDE_DIR', False):
0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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27 ./configure --prefix=$env.INSTALL_DIR --x-includes=$env.X11_INCLUDE_DIR --x-libraries=$env.X11_LIB_DIR CFLAGS='-I$env.INSTALL_DIR/include'
0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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28 #else:
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29 ./configure --prefix=$env.INSTALL_DIR
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30 #end if
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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31 </action>
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32 <action type="shell_command">make &amp;&amp; make install</action>
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33 <action type="set_environment">
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34 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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35 </action>
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36 </actions>
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37 </install>
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38 <readme>
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39 These links provide information for building the Emboss package in most environments.
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40
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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41 System requirements
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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42 http://emboss.sourceforge.net/download/#Requirements
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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44 Platform-dependent notes
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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45 http://emboss.sourceforge.net/download/#Platforms
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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46 </readme>
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47 </package>
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48 </tool_dependency>