Mercurial > repos > devteam > package_emboss_5_0_0

annotate tool_dependencies.xml @ 1:f117a9d9dc9c draft

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Update the tool_dependencies.xml to use a single <actions> tag set.
author devteam
date Tue, 25 Jun 2013 13:50:00 -0400
parents 9fd501d0f295
children 3569b0e8a8c1
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="libx11" version="1.5.0">
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4 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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5 </package>
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6 <package name="emboss" version="5.0.0">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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12 <package name="libx11" version="1.5.0" />
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13 </repository>
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14 </action>
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15 <action type="shell_command">
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16 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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17 ./configure --prefix=$INSTALL_DIR
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18 else
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19 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
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20 fi
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21 </action>
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f117a9d9dc9c Update the tool_dependencies.xml to use a single <actions> tag set.
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22 <action type="shell_command">make &amp;&amp; make install</action>
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23 <action type="download_file" extract="true">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
f117a9d9dc9c Update the tool_dependencies.xml to use a single <actions> tag set.
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24 <action type="change_directory">PHYLIP-3.6b</action>
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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25 <action type="shell_command">
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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26 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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27 ./configure --prefix=$INSTALL_DIR
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28 else
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f117a9d9dc9c Update the tool_dependencies.xml to use a single <actions> tag set.
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29 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR CFLAGS='-I../include'
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30 fi
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31 </action>
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f117a9d9dc9c Update the tool_dependencies.xml to use a single <actions> tag set.
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32 <action type="shell_command">make &amp;&amp; make install</action>
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33 </actions>
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34 </install>
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35 <readme>
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36 These links provide information for building the Emboss package in most environments.
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37
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38 System requirements
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39 http://emboss.sourceforge.net/download/#Requirements
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40
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41 Platform-dependent notes
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42 http://emboss.sourceforge.net/download/#Platforms
9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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43 </readme>
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44 </package>
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45 </tool_dependency>