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view tool_dependencies.xml @ 3:0e97d4936c23 draft

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Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
author devteam
date Mon, 22 Jul 2013 14:20:37 -0400
parents 3569b0e8a8c1
children be713681f50f
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line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="libx11" version="1.5.0">
        <repository changeset_revision="11623237372f" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="emboss" version="5.0.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="11623237372f" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
                        <package name="libx11" version="1.5.0" />
                    </repository>
                </action>
                <action language="cheetah" type="template_command">
                    #if env.get('X11_LIB_DIR', False) and env.get('X11_INCLUDE_DIR', False):
                        ./configure --prefix=$env.INSTALL_DIR --x-includes=$env.X11_INCLUDE_DIR --x-libraries=$env.X11_LIB_DIR
                    #else:
                        ./configure --prefix=$env.INSTALL_DIR
                    #end if
                </action>
                <action type="shell_command">make &amp;&amp; make install</action>
                <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
                <action type="change_directory">PHYLIP-3.6b</action>
                <action language="cheetah" type="template_command">
                    #if env.get('X11_LIB_DIR', False) and env.get('X11_INCLUDE_DIR', False):
                        ./configure --prefix=$env.INSTALL_DIR --x-includes=$env.X11_INCLUDE_DIR --x-libraries=$env.X11_LIB_DIR CFLAGS='-I$env.INSTALL_DIR/include'
                    #else:
                        ./configure --prefix=$env.INSTALL_DIR
                    #end if
                </action>
                <action type="shell_command">make &amp;&amp; make install</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
These links provide information for building the Emboss package in most environments.

System requirements
http://emboss.sourceforge.net/download/#Requirements

Platform-dependent notes
http://emboss.sourceforge.net/download/#Platforms
        </readme>
    </package>
</tool_dependency>