Mercurial > repos > devteam > fastq_trimmer
changeset 2:fdff6f6a8763 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_trimmer commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
| author | devteam |
|---|---|
| date | Fri, 18 Dec 2015 19:31:05 -0500 |
| parents | 3be753901f6e |
| children | b849e7c23b43 |
| files | fastq_trimmer.py fastq_trimmer.xml tool_dependencies.xml |
| diffstat | 3 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/fastq_trimmer.py Tue Oct 13 12:44:54 2015 -0400 +++ b/fastq_trimmer.py Fri Dec 18 19:31:05 2015 -0500 @@ -21,7 +21,7 @@ else: left_column_offset = int( left_offset ) right_column_offset = int( right_offset ) - if right_column_offset > 0: + if right_column_offset != 0: right_column_offset = -right_column_offset else: right_column_offset = None
--- a/fastq_trimmer.xml Tue Oct 13 12:44:54 2015 -0400 +++ b/fastq_trimmer.xml Fri Dec 18 19:31:05 2015 -0500 @@ -1,4 +1,4 @@ -<tool id="fastq_trimmer" name="FASTQ Trimmer" version="1.0.0"> +<tool id="fastq_trimmer" name="FASTQ Trimmer" version="1.0.1"> <description>by column</description> <requirements> <requirement type="package" version="1.0.0">galaxy_sequence_utils</requirement> @@ -16,8 +16,7 @@ <validator type="in_range" message="Base Offsets must be positive" min="0" max="inf"/> <validator type="expression" message="An integer is required.">int( float( value ) ) == float( value )</validator> </param> - <param name="right_column_offset" label="Offset from 3' end" value="0" type="integer" help="Values start at 0, increasing from the right"> - <validator type="in_range" message="Base Offsets must be positive" min="0" max="inf"/> + <param name="right_column_offset" label="Offset from 3' end" value="0" type="integer" help="Values start at 0, increasing from the right; use a negative value to remove everything to the right of the absolute value of the position"> <validator type="expression" message="An integer is required.">int( float( value ) ) == float( value )</validator> </param> </when>
--- a/tool_dependencies.xml Tue Oct 13 12:44:54 2015 -0400 +++ b/tool_dependencies.xml Fri Dec 18 19:31:05 2015 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="galaxy_sequence_utils" version="1.0.0"> - <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="6334612a010e" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>