Mercurial > repos > devteam > fastq_trimmer
changeset 1:3be753901f6e draft
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
| author | devteam |
|---|---|
| date | Tue, 13 Oct 2015 12:44:54 -0400 |
| parents | feb5479a48ff |
| children | fdff6f6a8763 |
| files | fastq_trimmer.xml tool_dependencies.xml |
| diffstat | 2 files changed, 8 insertions(+), 6 deletions(-) [+] |
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--- a/fastq_trimmer.xml Thu Jan 23 12:31:36 2014 -0500 +++ b/fastq_trimmer.xml Tue Oct 13 12:44:54 2015 -0400 @@ -81,6 +81,8 @@ </test> </tests> <help> +**What is does** + This tool allows you to trim the ends of reads. You can specify either absolute or percent-based offsets. Offsets are calculated, starting at 0, from the respective end to be trimmed. When using the percent-based method, offsets are rounded to the nearest integer. @@ -114,10 +116,10 @@ ------ -**Citation** - -If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_ - - </help> + + <citations> + <citation type="doi">10.1093/bioinformatics/btq281</citation> + </citations> + </tool>
--- a/tool_dependencies.xml Thu Jan 23 12:31:36 2014 -0500 +++ b/tool_dependencies.xml Tue Oct 13 12:44:54 2015 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="galaxy_sequence_utils" version="1.0.0"> - <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>