Mercurial > repos > devteam > fasta_concatenate_by_species
changeset 1:d9f0a11824e9
Add bx-python dependency (for maf_utilities.py).
| author | Nate Coraor <nate@bx.psu.edu> |
|---|---|
| date | Mon, 17 Nov 2014 10:08:37 -0500 |
| parents | a63b082a26eb |
| children | c5311b7718d1 |
| files | fasta_concatenate_by_species.xml tool_dependencies.xml utils/maf_utilities.py |
| diffstat | 3 files changed, 10 insertions(+), 2 deletions(-) [+] |
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--- a/fasta_concatenate_by_species.xml Mon May 19 10:59:37 2014 -0400 +++ b/fasta_concatenate_by_species.xml Mon Nov 17 10:08:37 2014 -0500 @@ -1,5 +1,8 @@ <tool id="fasta_concatenate0" name="Concatenate" version="0.0.0"> <description>FASTA alignment by species</description> + <requirements> + <requirement type="package" version="0.7.1">bx-python</requirement> + </requirements> <command interpreter="python">fasta_concatenate_by_species.py $input1 $out_file1</command> <inputs> <param name="input1" type="data" format="fasta" label="FASTA alignment"/> @@ -69,4 +72,4 @@ This tool will only work properly on files with Galaxy style FASTA headers. </help> -</tool> \ No newline at end of file +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Nov 17 10:08:37 2014 -0500 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bx-python" version="0.7.1"> + <repository changeset_revision="35e2457234ef" name="package_bx_python_0_7" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>
--- a/utils/maf_utilities.py Mon May 19 10:59:37 2014 -0400 +++ b/utils/maf_utilities.py Mon Nov 17 10:08:37 2014 -0500 @@ -3,7 +3,6 @@ Provides wrappers and utilities for working with MAF files and alignments. """ #Dan Blankenberg -import pkg_resources; pkg_resources.require( "bx-python" ) import bx.align.maf import bx.intervals import bx.interval_index_file