# HG changeset patch
# User Nate Coraor <nate@bx.psu.edu>
# Date 1416236917 18000
# Node ID d9f0a11824e9f0c1de8ecfe62c57522196cf7f6c
# Parent  a63b082a26eb0fe05621b4da1d1fbb947f504b79
Add bx-python dependency (for maf_utilities.py).

diff -r a63b082a26eb -r d9f0a11824e9 fasta_concatenate_by_species.xml
--- a/fasta_concatenate_by_species.xml	Mon May 19 10:59:37 2014 -0400
+++ b/fasta_concatenate_by_species.xml	Mon Nov 17 10:08:37 2014 -0500
@@ -1,5 +1,8 @@
 <tool id="fasta_concatenate0" name="Concatenate" version="0.0.0">
   <description>FASTA alignment by species</description>
+  <requirements>
+    <requirement type="package" version="0.7.1">bx-python</requirement>
+  </requirements>
   <command interpreter="python">fasta_concatenate_by_species.py $input1 $out_file1</command>
   <inputs>
     <param name="input1" type="data" format="fasta" label="FASTA alignment"/>
@@ -69,4 +72,4 @@
  This tool will only work properly on files with Galaxy style FASTA headers.
 
 </help>
-</tool>
\ No newline at end of file
+</tool>
diff -r a63b082a26eb -r d9f0a11824e9 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 17 10:08:37 2014 -0500
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bx-python" version="0.7.1">
+        <repository changeset_revision="35e2457234ef" name="package_bx_python_0_7" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>
diff -r a63b082a26eb -r d9f0a11824e9 utils/maf_utilities.py
--- a/utils/maf_utilities.py	Mon May 19 10:59:37 2014 -0400
+++ b/utils/maf_utilities.py	Mon Nov 17 10:08:37 2014 -0500
@@ -3,7 +3,6 @@
 Provides wrappers and utilities for working with MAF files and alignments.
 """
 #Dan Blankenberg
-import pkg_resources; pkg_resources.require( "bx-python" )
 import bx.align.maf
 import bx.intervals
 import bx.interval_index_file