Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy
annotate data_manager/ncbi_taxonomy_fetcher.xml @ 4:cef5c909ccb8 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 79946a95eb9a4c98fde04fa2cb3bc6a31a28e407"
author | iuc |
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date | Tue, 07 Jul 2020 00:05:59 +0000 |
parents | f7b443a73374 |
children | eaca3e270bf6 |
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078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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1 <?xml version="1.0"?> |
4
cef5c909ccb8
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 79946a95eb9a4c98fde04fa2cb3bc6a31a28e407"
iuc
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2 <tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.1"> |
0
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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3 <description>taxonomy downloader</description> |
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8dd4076813ef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
parents:
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4 <command detect_errors="exit_code"> |
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078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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5 <![CDATA[ |
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8dd4076813ef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
parents:
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6 python '$__tool_directory__/data_manager.py' --out '${out_file}' |
0
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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7 #if $taxonomy_url: |
1
8dd4076813ef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
parents:
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8 --url '${taxonomy_url}' |
0
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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9 #end if |
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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10 #if $database_name: |
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8dd4076813ef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
parents:
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11 --name '${database_name}' |
0
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
diff
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12 #end if |
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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13 ]]> |
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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14 </command> |
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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15 <inputs> |
1
8dd4076813ef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
parents:
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16 <param name="database_name" type="text" optional="true" label="Name for this database" help="Enter a unique identifier, or leave blank for today's date" /> |
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3d628f1e1bef
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 04825a097d217d30deb5fcb6906fe718023e25b6"
iuc
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17 <param name="taxonomy_url" type="text" value='ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz' label="Enter URL for taxonomy files" /> |
0
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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18 </inputs> |
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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19 <outputs> |
1
8dd4076813ef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
parents:
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20 <data name="out_file" format="data_manager_json" /> |
0
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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21 </outputs> |
078e803565cf
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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22 </tool> |