diff data_manager/ncbi_taxonomy_fetcher.xml @ 0:078e803565cf draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/ncbi_taxonomy_fetcher.xml	Fri Nov 06 14:16:28 2015 -0500
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.0">
+    <description>taxonomy downloader</description>
+    <stdio>
+        <exit_code description="Error" level="fatal" range="1:" />
+    </stdio>
+    <command interpreter="python">
+    <![CDATA[
+        data_manager.py --out "${out_file}"
+        #if $taxonomy_url:
+            --url "${taxonomy_url}"
+        #end if
+        #if $database_name:
+            --name "${database_name}"
+        #end if
+    ]]>
+    </command>
+    <inputs>
+        <param help="Enter a unique identifier, or leave blank for today's date" label="Name for this database" name="database_name" type="text" optional="True" />
+        <param label="Enter URL for taxonomy files" name="taxonomy_url" type="text" />
+    </inputs>
+    <outputs>
+        <data format="data_manager_json" name="out_file" />
+    </outputs>
+</tool>