Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy
comparison data_manager/ncbi_taxonomy_fetcher.xml @ 0:078e803565cf draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
author | devteam |
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date | Fri, 06 Nov 2015 14:16:28 -0500 |
parents | |
children | 8dd4076813ef |
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1 <?xml version="1.0"?> | |
2 <tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.0"> | |
3 <description>taxonomy downloader</description> | |
4 <stdio> | |
5 <exit_code description="Error" level="fatal" range="1:" /> | |
6 </stdio> | |
7 <command interpreter="python"> | |
8 <![CDATA[ | |
9 data_manager.py --out "${out_file}" | |
10 #if $taxonomy_url: | |
11 --url "${taxonomy_url}" | |
12 #end if | |
13 #if $database_name: | |
14 --name "${database_name}" | |
15 #end if | |
16 ]]> | |
17 </command> | |
18 <inputs> | |
19 <param help="Enter a unique identifier, or leave blank for today's date" label="Name for this database" name="database_name" type="text" optional="True" /> | |
20 <param label="Enter URL for taxonomy files" name="taxonomy_url" type="text" /> | |
21 </inputs> | |
22 <outputs> | |
23 <data format="data_manager_json" name="out_file" /> | |
24 </outputs> | |
25 </tool> |