Mercurial > repos > devteam > condense_characters

annotate condense_characters.xml @ 0:5c87e8fdf38b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 11:24:51 -0500
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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1 <tool id="Condense characters1" name="Condense" version="1.0.0">
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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2 <description>consecutive characters</description>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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3 <command interpreter="perl">condense_characters.pl "${input}" "${character}" "${out_file1}"</command>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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4 <inputs>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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5 <!-- <display>condense all consecutive $character from $input</display> -->
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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6 <param name="character" type="select" label="Condense all consecutive">
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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7 <option value="T">Tabs</option>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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8 <option value="Sp">Spaces</option>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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9 <option value="Dt">Dots</option>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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10 <option value="C">Commas</option>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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11 <option value="D">Dashes</option>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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12 <option value="U">Underscores</option>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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13 <option value="P">Pipes</option>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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14 </param>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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15 <param format="txt" name="input" type="data" label="in this Query"/>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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16 </inputs>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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17 <outputs>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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18 <data format="input" name="out_file1" metadata_source="input" />
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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19 </outputs>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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20 <tests>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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21 <test>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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22 <param name="character" value="T"/>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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23 <param name="input" value="1.bed"/>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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24 <output name="out_file1" file="eq-condense.dat"/>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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25 </test>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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26 </tests>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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27 <help>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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28
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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29 **What it does**
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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30
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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31 This tool condenses all consecutive characters of a specified type.
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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32
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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33 -----
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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34
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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35 **Example**
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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36
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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37 - Input file::
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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38
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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39 geneX,,,10,,,,,20
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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40 geneY,,5,,,,,12,15,9,
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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41
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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42 - Condense all consecutive commas. The above file will be converted into::
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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43
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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44 geneX,10,20
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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45 geneY,5,12,15,9
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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46
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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47 </help>
5c87e8fdf38b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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48 </tool>