Mercurial > repos > devteam > condense_characters
diff condense_characters.xml @ 0:5c87e8fdf38b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author | devteam |
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date | Mon, 09 Nov 2015 11:24:51 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/condense_characters.xml Mon Nov 09 11:24:51 2015 -0500 @@ -0,0 +1,48 @@ +<tool id="Condense characters1" name="Condense" version="1.0.0"> + <description>consecutive characters</description> + <command interpreter="perl">condense_characters.pl "${input}" "${character}" "${out_file1}"</command> + <inputs> +<!-- <display>condense all consecutive $character from $input</display> --> + <param name="character" type="select" label="Condense all consecutive"> + <option value="T">Tabs</option> + <option value="Sp">Spaces</option> + <option value="Dt">Dots</option> + <option value="C">Commas</option> + <option value="D">Dashes</option> + <option value="U">Underscores</option> + <option value="P">Pipes</option> + </param> + <param format="txt" name="input" type="data" label="in this Query"/> + </inputs> + <outputs> + <data format="input" name="out_file1" metadata_source="input" /> + </outputs> + <tests> + <test> + <param name="character" value="T"/> + <param name="input" value="1.bed"/> + <output name="out_file1" file="eq-condense.dat"/> + </test> + </tests> + <help> + +**What it does** + +This tool condenses all consecutive characters of a specified type. + +----- + +**Example** + +- Input file:: + + geneX,,,10,,,,,20 + geneY,,5,,,,,12,15,9, + +- Condense all consecutive commas. The above file will be converted into:: + + geneX,10,20 + geneY,5,12,15,9 + +</help> +</tool>