Mercurial > repos > devteam > compute_q_values
changeset 3:d1521b82b9fe draft
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
| author | devteam |
|---|---|
| date | Tue, 13 Oct 2015 12:15:36 -0400 |
| parents | d73e13ce8feb |
| children | cca732cba98b |
| files | compute_q_values.xml tool_dependencies.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/compute_q_values.xml Mon Apr 14 09:09:24 2014 -0400 +++ b/compute_q_values.xml Tue Oct 13 12:15:36 2015 -0400 @@ -11,14 +11,14 @@ <inputs> <param format="tabular" name="inputFile1" type="data" label="Select the p-values file"/> - <param type="text" name="inputLambda2" size="100" value="sequence_from_0_to_0.95_increment_0.05" label="What is the lambda value?" help="Either choose the default sequence or one deciaml value between 0 and 1"/> + <param type="text" name="inputLambda2" value="sequence_from_0_to_0.95_increment_0.05" label="What is the lambda value?" help="Either choose the default sequence or one deciaml value between 0 and 1"/> <param name="inputPI0_method3" type="select" label="Choose the PI method:"> <option value="smoother">smoother</option> <option value="bootstrap">bootstrap</option> </param> - <param type="float" name="inputFDR_level4" size="5" value="" label="What is the FDR level?" help="The FDR level must be between 0 and 1"/> + <param type="float" name="inputFDR_level4" value="" label="What is the FDR level?" help="The FDR level must be between 0 and 1"/> <param name="inputRobust5" type="select" label="Do you want to make the estimate more robust:" help="Choose TRUE for small p-values"> <option value="FALSE">FALSE</option>
--- a/tool_dependencies.xml Mon Apr 14 09:09:24 2014 -0400 +++ b/tool_dependencies.xml Tue Oct 13 12:15:36 2015 -0400 @@ -1,9 +1,9 @@ <?xml version="1.0"?> <tool_dependency> - <package name="R" version="2.11.0"> - <repository changeset_revision="df2d1c96d0e9" name="package_r_2_11_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <package name="R" version="2.11.0"> + <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="bioc_qvalue" version="1.34.0"> - <repository changeset_revision="a02c837d46ce" name="package_bioc_qvalue_1_34_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="702c422027de" name="package_bioc_qvalue_1_34_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>