# HG changeset patch
# User devteam
# Date 1444752936 14400
# Node ID d1521b82b9fe400ff98acdc48433f900a82ddfc0
# Parent  d73e13ce8feb634a6df9171de27ffb3c68c0bf37
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734

diff -r d73e13ce8feb -r d1521b82b9fe compute_q_values.xml
--- a/compute_q_values.xml	Mon Apr 14 09:09:24 2014 -0400
+++ b/compute_q_values.xml	Tue Oct 13 12:15:36 2015 -0400
@@ -11,14 +11,14 @@
   <inputs>
   	<param format="tabular" name="inputFile1" type="data" label="Select the p-values file"/>
   	
-  	<param type="text" name="inputLambda2" size="100" value="sequence_from_0_to_0.95_increment_0.05" label="What is the lambda value?" help="Either choose the default sequence or one deciaml value between 0 and 1"/>
+  	<param type="text" name="inputLambda2" value="sequence_from_0_to_0.95_increment_0.05" label="What is the lambda value?" help="Either choose the default sequence or one deciaml value between 0 and 1"/>
   	
   	<param name="inputPI0_method3" type="select" label="Choose the PI method:">
     	<option value="smoother">smoother</option>
       	<option value="bootstrap">bootstrap</option>
     </param>
     
-    <param type="float" name="inputFDR_level4" size="5" value="" label="What is the FDR level?" help="The FDR level must be between 0 and 1"/>
+    <param type="float" name="inputFDR_level4" value="" label="What is the FDR level?" help="The FDR level must be between 0 and 1"/>
     
     <param name="inputRobust5" type="select" label="Do you want to make the estimate more robust:" help="Choose TRUE for small p-values">
   		<option value="FALSE">FALSE</option>
diff -r d73e13ce8feb -r d1521b82b9fe tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Apr 14 09:09:24 2014 -0400
+++ b/tool_dependencies.xml	Tue Oct 13 12:15:36 2015 -0400
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="R" version="2.11.0">
-        <repository changeset_revision="df2d1c96d0e9" name="package_r_2_11_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <package name="R" version="2.11.0">
+      <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bioc_qvalue" version="1.34.0">
-        <repository changeset_revision="a02c837d46ce" name="package_bioc_qvalue_1_34_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="702c422027de" name="package_bioc_qvalue_1_34_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>