Mercurial > repos > devteam > bam_to_sam

changeset 2:6eebf8420e31 draft

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Uploaded
author devteam
date Wed, 04 Mar 2015 22:25:09 -0500
parents 38859774da87
children ad3c355b8249
files bam_to_sam.xml shed_upload.tar.gz tool_dependencies.xml
diffstat 3 files changed, 4 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/bam_to_sam.xml	Thu Mar 27 14:02:29 2014 -0400
+++ b/bam_to_sam.xml	Wed Mar 04 22:25:09 2015 -0500
@@ -56,11 +56,8 @@
 
 .. _SAMTools: http://samtools.sourceforge.net/samtools.shtml
 
-------
-
-**Citation**
-
-For the underlying tool, please cite `Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. <http://www.ncbi.nlm.nih.gov/pubmed/19505943>`_
-
   </help>
+  <citations>
+      <citation type="doi">10.1093/bioinformatics/btp352</citation>
+  </citations>
 </tool>
Binary file shed_upload.tar.gz has changed
--- a/tool_dependencies.xml	Thu Mar 27 14:02:29 2014 -0400
+++ b/tool_dependencies.xml	Wed Mar 04 22:25:09 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="samtools" version="0.1.19">
-        <repository changeset_revision="233326db3402" name="package_samtools_0_1_19" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>