# HG changeset patch
# User devteam
# Date 1425525909 18000
# Node ID 6eebf8420e3123c3b3ad0ce55668228f8b1cf6be
# Parent  38859774da87e69e7e701cfdbf391fbac615c6fe
Uploaded

diff -r 38859774da87 -r 6eebf8420e31 bam_to_sam.xml
--- a/bam_to_sam.xml	Thu Mar 27 14:02:29 2014 -0400
+++ b/bam_to_sam.xml	Wed Mar 04 22:25:09 2015 -0500
@@ -56,11 +56,8 @@
 
 .. _SAMTools: http://samtools.sourceforge.net/samtools.shtml
 
-------
-
-**Citation**
-
-For the underlying tool, please cite `Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. <http://www.ncbi.nlm.nih.gov/pubmed/19505943>`_
-
   </help>
+  <citations>
+      <citation type="doi">10.1093/bioinformatics/btp352</citation>
+  </citations>
 </tool>
diff -r 38859774da87 -r 6eebf8420e31 shed_upload.tar.gz
Binary file shed_upload.tar.gz has changed
diff -r 38859774da87 -r 6eebf8420e31 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Mar 27 14:02:29 2014 -0400
+++ b/tool_dependencies.xml	Wed Mar 04 22:25:09 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="samtools" version="0.1.19">
-        <repository changeset_revision="233326db3402" name="package_samtools_0_1_19" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>