annotate carettest.xml @ 3:e4fd09d9426f draft default tip

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author deepakjadmin
date Fri, 25 Sep 2015 13:49:04 -0400
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1 <tool id="danmofdgk03dls" name="R 3.2.0 caret installation test" version="1.0.0">
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2 <description>R version and installation test</description>
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3 <requirements>
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4 <requirement type="set_environment">R_ROOT_DIR</requirement>
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5 <requirement type="package" version="3.2.0">R</requirement>
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6 <requirement type="package" version="1.0.0">caret-tools</requirement>
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7 </requirements>
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8 <command> GALAXY_ROOT_DIR=`pwd`;
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9 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
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10 cd ../../../../;
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11 GALAXY_ROOT_DIR=`pwd`;
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12 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
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13 \$R_ROOT_DIR/bin/Rscript test11.R $output &gt; $log 2&gt;&amp;1
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14 </command>
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15 <outputs>
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16 <data type="data" format="RData" name="output" label ="R-environment" />
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17 <data format="txt" name="log" label ="packages loaded" />
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18 </outputs>
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19 <help>
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20
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21 </help>
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22 </tool>
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