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author deepakjadmin
date Fri, 25 Sep 2015 13:49:04 -0400
parents aaf06aa28bdb
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<tool id="danmofdgk03dls" name="R 3.2.0 caret installation test" version="1.0.0">
  <description>R version and installation test</description>
<requirements>
     <requirement type="set_environment">R_ROOT_DIR</requirement>
    <requirement type="package" version="3.2.0">R</requirement>
    <requirement type="package" version="1.0.0">caret-tools</requirement>
</requirements>
  <command>   	 GALAXY_ROOT_DIR=`pwd`; 
  		 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
                 cd ../../../../;
                 GALAXY_ROOT_DIR=`pwd`;
                 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
                 \$R_ROOT_DIR/bin/Rscript test11.R $output  &gt; $log 2&gt;&amp;1
   </command>
  <outputs>
    <data type="data" format="RData" name="output" label ="R-environment" />
    <data format="txt" name="log" label ="packages loaded" />
  </outputs>
  <help>
 
  </help>
</tool>