Mercurial > repos > deepakjadmin > caret_tools_test_1

diff carettest.xml @ 2:aaf06aa28bdb draft

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author deepakjadmin
date Fri, 25 Sep 2015 13:48:24 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/carettest.xml	Fri Sep 25 13:48:24 2015 -0400
@@ -0,0 +1,23 @@
+<tool id="danmofdgk03dls" name="R 3.2.0 caret installation test" version="1.0.0">
+  <description>R version and installation test</description>
+<requirements>
+     <requirement type="set_environment">R_ROOT_DIR</requirement>
+    <requirement type="package" version="3.2.0">R</requirement>
+    <requirement type="package" version="1.0.0">caret-tools</requirement>
+</requirements>
+  <command>   	 GALAXY_ROOT_DIR=`pwd`; 
+  		 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
+                 cd ../../../../;
+                 GALAXY_ROOT_DIR=`pwd`;
+                 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
+                 \$R_ROOT_DIR/bin/Rscript test11.R $output  &gt; $log 2&gt;&amp;1
+   </command>
+  <outputs>
+    <data type="data" format="RData" name="output" label ="R-environment" />
+    <data format="txt" name="log" label ="packages loaded" />
+  </outputs>
+  <help>
+ 
+  </help>
+</tool>
+