Mercurial > repos > deepakjadmin > caret_tool1

changeset 4:dd73689fadf2 draft

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Uploaded
author deepakjadmin
date Fri, 22 Jan 2016 11:42:28 -0500
parents 91146e0cf2a4
children b62469661737
files tool1V2.xml
diffstat 1 files changed, 39 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool1V2.xml	Fri Jan 22 11:42:28 2016 -0500
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+<tool id="AdsmkdqaddodfdalV2" name="Prepare input file">
+<description>
+This Tool Converts Input csv File into RData Which Is Further Used for Model Building
+ </description>
+ <!--command interpreter="bash">step1.sh $file1 $output1 </command-->
+ <requirements>
+       <requirement type="set_environment">CARET_TOOL1_PATH</requirement>
+     <requirement type="set_environment">R_ROOT_DIR</requirement>
+    <requirement type="package" version="3.2.0">R</requirement>
+    </requirements>
+ <command interpreter="Rscript">csv2rdatatrain.R $file1 $RData </command>
+ <inputs>
+ <param format="csv" name="file1" type="data" label="Select file containing training data" help="CSV format" />
+ </inputs>
+ <outputs>
+ <data type="data" format="RData" name="RData" label="Input.RData" />
+ </outputs>
+<help>
+.. class:: infomark
+
+**Input "csv file" format must be as given below :**
+
+
+"",feature1,feaure2,feature3,..,activity
+
+
+cpd1,623,0.4,3.4,..,Active
+                      
+cpd2,234,0.9,5.6,..,Inactive 
+
+cpd3,567,0.5,3.14,..,Active
+
+cpd4,231,0.1,1.2,..,Inactive 
+
+here "cpd" stands for name or id of a compound. It is rowname with no column header.     
+
+
+</help>
+</tool>